SNP Profiles of GU 133 /C   View Data

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 Key

 1234567891011121314
_Input profile
TTCCAATTTTGGAACCGGCCGGGGAACC
1._GC-08-164-4-07
TTCCAATTTTGGAACCGGCCGGGGAACC
2._GC-01-116-6-13
TTCCAATTTTGGAACCGGCCGGGGAACC
3._GC-01-116-6-13
TTCCAATTTTGGAACCGGCCGGGGAACC
4._GC-01-116-6-13
TTCCAATTTTGGAACCGGCCGGGGAACC
5._GC-08-164-4-07
TTCCAATTTTGGAACCGGCCGGGGAACC
6._GC-08-164-4-07
TTCCAATTTTGGAACCGGCCGGGGAACC
7._GC-01-116-6-13
TTCCAATTTTGGAACC_CCGGGGAACC
8._GC-08-164-4-07
TTCCAATTTTGG_CCGGCCGGGGAACC
9._GC-08-164-4-07
TTCCAATTTTGGAACCGGCCGGGGAACC
10._GC-08-164-4-07
TTCCAATTTTGGAACCGGCCGGGGAACC
11._GC-01-116-6-13
TTCCAATTTTGGAACC_CCGGGGAACC
12._GU_133_/C
__AATTTT_AACCGGCC__AA_
13._GU_133_/C
__AATTTT_AACCGGCC__AA_
14._GU_133_/C
__AATTTT_AACCGGCC__AA_
15._GU_133_/C
__AATTTT_AACCGGCC__AA_
16._GU_133_/C
__AATTTT_AACCGGCC__AA_
17._GU_133_/C
__AATTTT_AACCGGCC__AA_
18._GU_133_/C
__AATTTT_AACC_CC__AA_
19._GU_133_/C
__AATTTT__CCGGCC__AA_
20._GU_133_/C
__AATTTT_AACCGGCC__AA_
21._GU_133_/C
__AATTTT_AACCGGCC__AA_
22._GU_133_/C
__AATTTT_AACC_CC__AA_
23._RUQ_190
__AA_____GG_GG___
24._RUQ_190
__AAGTTT_AACCGGCC__AA_
25._RUQ_190
__AA_TTGGAAGGGG__GGAACC
26._GC-01-116-6-13
AACCAAAAAAGGAAGGGGGGGGGGAAGG
27._MITC-000670
AACCAAAAAAGGAAGGGGGGGGGGAAGG
 1516171819202122232425262728
_Input profile
GGAACCGGCCACCCCCCCGGAATTAAGG
1._GC-08-164-4-07
GGAACCGGCCACCCCCCCGGAATTAAGG
2._GC-01-116-6-13
GGAACCGGCCACCCCCCCGGAATTAAGG
3._GC-01-116-6-13
GGAACCGGCCACCCCCCCGGAATTAAGG
4._GC-01-116-6-13
GGAACCGGCCACCCCCCCGGAATTAAGG
5._GC-08-164-4-07
GGAACCGGCCACCCCCCCGGAATTAAGG
6._GC-08-164-4-07
GGAACCGGCCACCCCC_GGAATTAAGG
7._GC-01-116-6-13
GGAACCGGCCACCCCCCCGGAATTAAGG
8._GC-08-164-4-07
GGAACCGGCCACCCCCCCGGAATTAAGG
9._GC-08-164-4-07
GGAA_GGCCACCCCCCCGGAATTAAGG
10._GC-08-164-4-07
GGAACCGGCCACCCCCCCGGAATTAAGG
11._GC-01-116-6-13
GGAACCGGCCACCCCCCCGGAATTAAGG
12._GU_133_/C
GGAACCGGCCAC_CC_GG___GG
13._GU_133_/C
GGAACCGGCCAC_CC_GG___GG
14._GU_133_/C
GGAACCGGCCAC_CC_GG___GG
15._GU_133_/C
GGAACCGGCCAC_CC_GG___GG
16._GU_133_/C
GGAACCGGCCAC_CC_GG___GG
17._GU_133_/C
GGAACCGGCCAC_CC_GG___GG
18._GU_133_/C
GGAACCGGCCAC_CC_GG___GG
19._GU_133_/C
GGAACCGGCCAC_CC_GG___GG
20._GU_133_/C
GGAA_GGCCAC_CC_GG___GG
21._GU_133_/C
GGAACCGGCCAC_CC_GG___GG
22._GU_133_/C
GGAACCGGCCAC_CC_GG___GG
23._RUQ_190
_AA__CCACCC_CCGGAA_AAGG
24._RUQ_190
GGAACCGGCCAC_CC_GG___GG
25._RUQ_190
____CCACCC______CC
26._GC-01-116-6-13
_AA_CCCCACGGGG_CCAAAAAACC
27._MITC-000670
_AA_CCCCACGGGG_CCAAAAAACC
 2930313233343536373839404142
_Input profile
CCCCGGCCCCGGGGTTTTTTCCCCCGGG
1._GC-08-164-4-07
CCCCGGCCCCGGGGTTTTTTCCCCCGGG
2._GC-01-116-6-13
CCCCGGCCCCGGGGTTTTTTCCCCCGGG
3._GC-01-116-6-13
CCCCGGCCCCGGGGTTTTTTCCCCCGGG
4._GC-01-116-6-13
CCCCGGCCCCGGGGTTTTTTCCCCCGGG
5._GC-08-164-4-07
CCCCGGCCCCGGGGTTTTTTCCCCCGGG
6._GC-08-164-4-07
CCCCGGCCCCGGGGTTTTTTCCCCCGGG
7._GC-01-116-6-13
CCCCGGCCCCGGGGTTTTTTCCCCCGGG
8._GC-08-164-4-07
CCCCGGCCCCGGGGTTTTTTCCCCCGGG
9._GC-08-164-4-07
CCCCGGCCCCGGGGTTTTTTCCCCCGGG
10._GC-08-164-4-07
CCCCGGCCCCGGGGTT_TTCCCCCGGG
11._GC-01-116-6-13
CC_GGCCCCGGGGTT_TTCCCCCGGG
12._GU_133_/C
_CCGG_CC___TT__CCCGGG
13._GU_133_/C
_CCGG_CC___TT__CCCGGG
14._GU_133_/C
_CCGG_CC___TT__CCCGGG
15._GU_133_/C
_CCGG_CC___TT__CCCGGG
16._GU_133_/C
_CCGG_CC___TT__CCCGGG
17._GU_133_/C
_CCGG_CC___TT__CCCGGG
18._GU_133_/C
_CCGG_CC___TT__CCCGGG
19._GU_133_/C
_CCGG_CC___TT__CCCGGG
20._GU_133_/C
_CCGG_CC___TT__CCCGGG
21._GU_133_/C
_CCGG_CC______CCCGGG
22._GU_133_/C
__GG_CC______CCCGGG
23._RUQ_190
__GGCC____TT___CG_
24._RUQ_190
_CCGG_CC___TT__CCCGGG
25._RUQ_190
GGCC__CC_GGTT__CC_CG_
26._GC-01-116-6-13
_GGGG_GGCCGG_AAAAGGGGCGGG
27._MITC-000670
_GGGG_GGCCGG_AAAAGGGGCGGG

Input profile: GU_133_/C RUQ_190

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._GU_133_/C GC-08-164-4-07

identical
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

2._GU_133_/C GC-01-116-6-13

identical
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP2
 Mars, 2018

3._GU_133_/C GC-01-116-6-13

identical
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

4._GU_133_/C GC-01-116-6-13

identical
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

5._GU_133_/C GC-08-164-4-07

identical
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

6._GU_133_/C GC-08-164-4-07

identical
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

7._GU_133_/C GC-01-116-6-13

identical
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

8._GU_133_/C GC-08-164-4-07

identical
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

9._GU_133_/C GC-08-164-4-07

identical
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

10._GU_133_/C GC-08-164-4-07

identical
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

11._GU_133_/C GC-01-116-6-13

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP3
 Mars, 2018

12._GU_133_/C

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1613 2
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

13._GU_133_/C

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1613 3 > FP
 Dapeng Zhang, 2016

14._GU_133_/C

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1613 9 > FP
 Dapeng Zhang, 2016

15._GU_133_/C

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8407 1
 Dapeng Zhang, 2016

16._GU_133_/C

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8407 2
 Dapeng Zhang, 2016

17._GU_133_/C

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8407 11
 Dapeng Zhang, 2016

18._GU_133_/C

identical
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1613 1 > FP
 Dapeng Zhang, 2016

19._GU_133_/C

identical
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8407 3
 Dapeng Zhang, 2016

20._GU_133_/C

identical
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8407 8
 Dapeng Zhang, 2016

21._GU_133_/C

identical
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8407 10
 Dapeng Zhang, 2016

22._GU_133_/C

identical
21 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1613 10 > F
 Dapeng Zhang, 2016

23._GU_133_/C RUQ_190

identical
16 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

24._GU_133_/C RUQ_190

97.9 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

25._GU_133_/C RUQ_190

85 %
20 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

26._GU_133_/C GC-01-116-6-13

47.2 %
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 6, Rep: 13, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

27._GU_133_/C MITC-000670

47.2 %
36 shared markers

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USDA-SHRS, United States of America
 Mars, 2018

 

  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP998 32TcSNP999 33TcSNP1060 34TcSNP1063 35TcSNP1111
36TcSNP1126 37TcSNP1253 38TcSNP1309 39TcSNP1439 40TcSNP1442
41TcSNP1458 42TcSNP1484